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Shimodaira Group

Statistical Science and Bioinformatics

• Recent Activities
• Members
• Software developed by Shimodaira Group
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Recent Activities

[2010/06/30] I gave a talk for the general public at Kumin Daigaku (Subject: DNA evolution and Statistics) Talk slides and YouTube video are available NEW!

[2007/01/07]　Paul Sheridan made a poster presentation at PSB2007

• Paul Sheridan, Takeshi Kamimura, and Hidetoshi Shimodaira: Comparing Scale-free Priors over Graph Structures for Bayesian Inference of Gene Networks [poster PDF，poster image]

[2006/01/07] Takeshi Kamimura (Master 2) made a poster presentation at PSB2006

[2005/12/20] Takeshi Kamimura (Master 2) and Yukitake Tani (under grad 4) made poster presentations at GIW2005

• Takeshi Kamimura and Hidetoshi Shimodaira: A Scale-Free Prior over Graph Structures for Bayesian Inference of Gene Networks [poster image, poster PDF, paper PDF]
• Yukitaka Tani, Takeshi Kamimura, Takeshi Nagashima, Kaori Ide, Mariko Hatakeyama, Hidetoshi Shimodaira: Multiplicative Decomposition of Time- and Dose-Dependent Gene Expression Changes [poster image, poster PDF, paper PDF]

[2005/02/24] Ryota Suzuki (Master 2) has released pvclust (An R package for hierarchical clustering with p-values) .

[2005/01/07] Takeshi Kamimura (Master 1) made a poster presentation at PSB2005

[2004/12/13] Ryota Suzuki (Master 2), Takeshi Kamimura (Master 1), and Tomoya Taniguchi (under grad 4) made poster presentations at GIW2004

• Ryota Suzuki and Hidetoshi Shimodaira: An application of multiscale bootstrap resampling to hierarchical clustering of microarray data: How accurate are these clusters? [poster image, poster PDF, paper PDF]
• Takeshi Kamimura and Hidetoshi Shimodaira: Multiscale bootstrap analysis of gene networks based on graphical gaussian modeling [poster image, poster PDF, paper PDF]
• Ryota Suzuki, Tomoya Taniguchi, and Hidetoshi Shimodaira: An approximate maximum likelihood method for phylogenetic tree analysis based on high-temperature Markov Chain Monte Carlo [poster image, poster PDF, paper PDF]

[2003/12/17] GIW2003

• T. Kamimura, H. Shimodaira, S. Imoto, S. Kim, K. Tashiro, S. Kuhara, S. Miyano (2003). Multiscale Bootstrap Analysis of Gene Networks Based on Bayesian Networks and Nonparametric Regression, Genome Informatics, 14, 350-351. [poster image, poster PDF, paper PDF]

			Mr. Kamimura at GIW2003

Current Members 2011

• Hidetoshi Shimodaira (Assoc. Prof.)
• Aizhen Ren (phd student 3)
• Kouta Mine (Master 2)
• Xia Guo (Master 2)
• Haruhisa Nagata (Master 1)
• Terumasa Hara (Master 1)
• Noritake Kaneshiro (Master 1)

Past Members

• Paul Sheridan (phd 2011.3)
• Masayoshi Aoki (Master 2011.3)
• Yusuke Komatsu (Master 2011.3)
• Cho Kyunghee (YSEP visitor from Seoul National University 2011.3)
• Haruka Aoi (Master 2010.3)
• Kouta Haga (Master 2010.3)
• Yuichi Yagahara (Master 2010.3)
• Yoshinobu Kawahara (Postdoc 2008.4-2009.9)
• Shohei Shimizu (Postdoc 2008.8-2009.3)
• Tatsunori Hisamatsu (Master 2008.3)
• Rie Kurashima (Undergrad 2007.3)
• Tomoya Taniguchi (Master 2007.3)
• Takeshi Kamimura (Master 2006.3)
• Ryota Suzuki (Master 2005.3)
• Toshitaka Uchiyama (Master 2005.3)
• Satoshi Kawabata (Bachelor 2005.3)
• Kenichi Tsukamoto (Master 2004.3)
• Yo Yamamoto (Master 2004.3)

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